HiTSeq 2017

HiTSeq 2017 Accepted Full papers

  • Xu Min, Wanwen Zeng, Ning Chen, Ting Chen and Rui Jiang. Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding.
  • Jing Guo and Jie Zheng. HopLand: Single-cell pseudotime recovery using continuous Hopfield network based modeling of Waddington’s epigenetic landscape.
  • Guillaume Marçais, David Pellow, Daniel Bork, Yaron Orenstein, Ron Shamir and Carl Kingsford. Improving the performance of minimizers and winnowing schemes.
  • Yohei Rosen, Jordan Eizenga and Benedict Paten. Modelling haplotypes with respect to reference cohort variation graphs.
  • Martina Fischer, Benjamin Strauch and Bernhard Y. Renard. Abundance estimation and differential testing on strain level in metagenomics data.
  • Prashant Pandey, Michael A. Bender, Rob Johnson and Rob Patro. deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph.
  • Mohsen Zakeri, Avi Srivastava, Fatemehalsadat Almodarresi TS and Rob Patro. Improved Data-Driven Likelihood Factorizations for Transcript Abundance Estimation.
    • Gryte Satas and Benjamin Raphael. Tumor Phylogeny Inference Using Tree-Constrained Importance Sampling.
    • Pınar Kavak, Yen-Yi Lin, Ibrahim Numanagić, Hossein Asghari, Tunga Güngör, Can Alkan and Faraz Hach. Discovery and genotyping of novel sequence insertions in many sequenced individuals.

Proceedings of past hiTSeq Meetings